References

“Alkylating Antineoplastic Agent.” 2020. Wikipedia. https://en.wikipedia.org/w/index.php?title=Alkylating_antineoplastic_agent&oldid=962430170.

Armstrong, Gregory T., Yan Chen, Yutaka Yasui, Wendy Leisenring, Todd M. Gibson, Ann C. Mertens, Marilyn Stovall, et al. 2016. “Reduction in Late Mortality Among 5-Year Survivors of Childhood Cancer.” New England Journal of Medicine 374 (9): 833–42. https://doi.org/10.1056/NEJMoa1510795.

Bar, Jacob, Ofer Davidi, Yacov Goshen, Moshe Hod, Itzhak Yaniv, and Rafael Hirsch. 2003. “Pregnancy Outcome in Women Treated with Doxorubicin for Childhood Cancer.” American Journal of Obstetrics and Gynecology 189 (3): 853–57. https://doi.org/10.1067/S0002-9378(03)00837-8.

Bath, Louise E., Hilary O. D. Critchley, Sarah E. Chambers, Richard A. Anderson, Christopher J. H. Kelnar, and W. Hamish B. Wallace. 1999. “Ovarian and Uterine Characteristics After Total Body Irradiation in Childhood and Adolescence: Response to Sex Steroid Replacement.” BJOG: An International Journal of Obstetrics & Gynaecology 106 (12): 1265–72. https://doi.org/10.1111/j.1471-0528.1999.tb08180.x.

Bedoschi, Giuliano M., Paula A. Navarro, and Kutluk H. Oktay. 2019. “Novel Insights into the Pathophysiology of Chemotherapy-Induced Damage to the Ovary.” Panminerva Medica 61 (1): 68–75. https://doi.org/10.23736/S0031-0808.18.03494-8.

Bedoschi, Giuliano, Paula Andrea Navarro, and Kutluk Oktay. 2016. “Chemotherapy-Induced Damage to Ovary: Mechanisms and Clinical Impact.” Future Oncology 12 (20): 2333–44. https://doi.org/10.2217/fon-2016-0176.

Bergstra, James, and Yoshua Bengio. n.d. “Random Search for Hyper-Parameter Optimization,” 25.

Bodner, Todd E. 2008. “What Improves with Increased Missing Data Imputations?” Structural Equation Modeling: A Multidisciplinary Journal 15 (4): 651–75.

Buuren, Stef van, and Karin Groothuis-Oudshoorn. 2011. “Mice: Multivariate Imputation by Chained Equations in R.” Journal of Statistical Software 45 (1): 1–67. https://doi.org/10.18637/jss.v045.i03.

Buuren, S. Van, J. P. L. Brand, C. G. M. Groothuis-Oudshoorn, and D. B. Rubin. 2006. “Fully Conditional Specification in Multivariate Imputation.” Journal of Statistical Computation and Simulation 76 (12): 1049–64. https://doi.org/10.1080/10629360600810434.

Buuren, Stef van, and Michael Greenacre. 2018. Flexible Imputation of Missing Data. Second.

Chemaitilly, Wassim, Zhenghong Li, Matthew J Krasin, Russell J Brooke, Carmen L Wilson, Daniel M Green, James L Klosky, Nicole Barnes, Karen L Clark, and Jonathan B Farr. 2017. “Premature Ovarian Insufficiency in Childhood Cancer Survivors: A Report from the St. Jude Lifetime Cohort.” The Journal of Clinical Endocrinology & Metabolism 102 (7): 2242–50.

Chemaitilly, Wassim, Ann C. Mertens, Pauline Mitby, John Whitton, Marilyn Stovall, Yutaka Yasui, Leslie L. Robison, and Charles A. Sklar. 2006. “Acute Ovarian Failure in the Childhood Cancer Survivor Study.” The Journal of Clinical Endocrinology & Metabolism 91 (5): 1723–8. https://doi.org/10.1210/jc.2006-0020.

Chen, Tianqi, and Carlos Guestrin. 2016a. “XGBoost: A Scalable Tree Boosting System.” In Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining - KDD ’16, 785–94. San Francisco, California, USA: ACM Press. https://doi.org/10.1145/2939672.2939785.

———. 2016b. “Xgboost: A Scalable Tree Boosting System.” In Proceedings of the 22nd Acm Sigkdd International Conference on Knowledge Discovery and Data Mining, 785–94.

“Childhood Cancer Survivor Study - 2013 Progress Report.” 2013. Childhood Cancer Survivor Study. https://ccss.stjude.org/content/dam/en_US/shared/ccss/documents/progress-report-2013.pdf.

Clark, Rebecca A, Sogol Mostoufi-Moab, Yutaka Yasui, Ngoc Khanh Vu, Charles A Sklar, Tarek Motan, Russell J Brooke, Todd M Gibson, Kevin C Oeffinger, and Rebecca M Howell. 2020. “Predicting Acute Ovarian Failure in Female Survivors of Childhood Cancer: A Cohort Study in the Childhood Cancer Survivor Study (CCSS) and the St Jude Lifetime Cohort (SJLIFE).” The Lancet Oncology 21 (3): 436–45.

Critchley, Hilary O. D., and W. Hamish B. Wallace. 2005. “Impact of Cancer Treatment on Uterine Function.” Journal of the National Cancer Institute. Monographs, no. 34: 64–68. https://doi.org/10.1093/jncimonographs/lgi022.

Dasari, Shaloam, and Paul Bernard Tchounwou. 2014. “Cisplatin in Cancer Therapy: Molecular Mechanisms of Action.” European Journal of Pharmacology 740 (October): 364–78. https://doi.org/10.1016/j.ejphar.2014.07.025.

Dudzinski, Denise M. 2004. “Ethical Issues in Fertility Preservation for Adolescent Cancer Survivors: Oocyte and Ovarian Tissue Cryopreservation.” Journal of Pediatric and Adolescent Gynecology 17 (2): 97–102. https://doi.org/10.1016/j.jpag.2004.01.004.

Graham, John W., Allison E. Olchowski, and Tamika D. Gilreath. 2007. “How Many Imputations Are Really Needed? Some Practical Clarifications of Multiple Imputation Theory.” Prevention Science 8 (3): 206–13.

Green, Daniel M., Vikki G. Nolan, Pamela J. Goodman, John A. Whitton, DeoKumar Srivastava, Wendy M. Leisenring, Joseph P. Neglia, et al. 2014. “The Cyclophosphamide Equivalent Dose as an Approach for Quantifying Alkylating Agent Exposure: A Report from the Childhood Cancer Survivor Study: Cyclophosphamide Equivalent Dose.” Pediatric Blood & Cancer 61 (1): 53–67. https://doi.org/10.1002/pbc.24679.

Kim, Hashin, Hoon Kim, and Seung-Yup Ku. 2018. “Fertility Preservation in Pediatric and Young Adult Female Cancer Patients.” Annals of Pediatric Endocrinology & Metabolism 23 (2): 70–74. https://doi.org/10.6065/apem.2018.23.2.70.

Leisenring, Wendy M., Ann C. Mertens, Gregory T. Armstrong, Marilyn A. Stovall, Joseph P. Neglia, Jennifer Q. Lanctot, John D. Boice, Jr, John A. Whitton, and Yutaka Yasui. 2009. “Pediatric Cancer Survivorship Research: Experience of the Childhood Cancer Survivor Study.” Journal of Clinical Oncology 27 (14): 2319. https://doi.org/10.1200/JCO.2008.21.1813.

Levine, Jennifer M, John A. Whitton, Jill P. Ginsberg, Daniel M. Green, Wendy M. Leisenring, Marilyn Stovall, Leslie L. Robison, Gregory T. Armstrong, and Charles A. Sklar. 2018. “Nonsurgical Premature Menopause and Reproductive Implications in Survivors of Childhood Cancer: A Report from the Childhood Cancer Survivor Study: NSPM and Reproductive Implications.” Cancer 124 (5): 1044–52. https://doi.org/10.1002/cncr.31121.

Little, Roderick J. A., and Donald B. Rubin. 2019. Statistical Analysis with Missing Data. Third edition. Wiley Series in Probability and Statistics. Hoboken, NJ: Wiley.

Medrano, Jose V, María del Mar Andrés, Sofía García, Sonia Herraiz, Teresa Vilanova-Pérez, Ellen Goossens, and Antonio Pellicer. 2018. “Basic and Clinical Approaches for Fertility Preservation and Restoration in Cancer Patients.” Trends in Biotechnology 36 (2): 199–215. https://doi.org/10.1016/j.tibtech.2017.10.010.

Meirow, D, and D Nugent. 2001. “The Effects of Radiotherapy and Chemotherapy on Female Reproduction.” Human Reproduction Update 7 (6): 535–43.

Morgan, S., R. A. Anderson, C. Gourley, W. H. Wallace, and N. Spears. 2012. “How Do Chemotherapeutic Agents Damage the Ovary?” Human Reproduction Update 18 (5): 525–35. https://doi.org/10.1093/humupd/dms022.

Mostoufi-Moab, Sogol, Kristy Seidel, Wendy M. Leisenring, Gregory T. Armstrong, Kevin C. Oeffinger, Marilyn Stovall, Lillian R. Meacham, et al. 2016. “Endocrine Abnormalities in Aging Survivors of Childhood Cancer: A Report from the Childhood Cancer Survivor Study.” Journal of Clinical Oncology: Official Journal of the American Society of Clinical Oncology 34 (27): 3240–7. https://doi.org/10.1200/JCO.2016.66.6545.

Muñoz, M., A. Santaballa, M. A. Seguí, C. Beato, S. de la Cruz, J. Espinosa, P. J. Fonseca, J. Perez, T. Quintanar, and A. Blasco. 2016. “SEOM Clinical Guideline of Fertility Preservation and Reproduction in Cancer Patients (2016).” Clinical and Translational Oncology 18 (12): 1229–36. https://doi.org/10.1007/s12094-016-1587-9.

Neglia, Joseph P., Debra L. Friedman, Yutaka Yasui, Ann C. Mertens, Sue Hammond, Marilyn Stovall, Sarah S. Donaldson, Anna T. Meadows, and Leslie L. Robison. 2001. “Second Malignant Neoplasms in Five-Year Survivors of Childhood Cancer: Childhood Cancer Survivor Study.” JNCI: Journal of the National Cancer Institute 93 (8): 618–29. https://doi.org/10.1093/jnci/93.8.618.

Nielsen, Didrik. 2016. “Tree Boosting with Xgboost-Why Does Xgboost Win" Every" Machine Learning Competition?” Master’s thesis, NTNU.

Oktay, Kutluk, Brittany E. Harvey, Ann H. Partridge, Gwendolyn P. Quinn, Joyce Reinecke, Hugh S. Taylor, W. Hamish Wallace, Erica T. Wang, and Alison W. Loren. 2018. “Fertility Preservation in Patients with Cancer: ASCO Clinical Practice Guideline Update.” Journal of Clinical Oncology 36 (19): 1994–2001. https://doi.org/10.1200/JCO.2018.78.1914.

Oktem, Ozgur, and Kutluk Oktay. 2007. “Quantitative Assessment of the Impact of Chemotherapy on Ovarian Follicle Reserve and Stromal Function.” Cancer 110 (10): 2222–9. https://doi.org/10.1002/cncr.23071.

“Overall CCSS Cohort Demographic and Treatment Exposure Tables.” n.d. Accessed December 5, 2020. https://ccss.stjude.org/content/dam/en_US/shared/ccss/documents/data/treatment-exposure-tables.pdf.

“Primary Ovarian Insufficiency Hormone Health Network.” n.d. Accessed November 17, 2020. https://www.hormone.org/diseases-and-conditions/primary-ovarian-insufficiency.

Robins, James M., and Andrea Rotnitzky. 1995. “Semiparametric Efficiency in Multivariate Regression Models with Missing Data.” Journal of the American Statistical Association 90 (429): 122–29. https://doi.org/10.1080/01621459.1995.10476494.

Robison, Leslie L., Gregory T. Armstrong, John D. Boice, Eric J. Chow, Stella M. Davies, Sarah S. Donaldson, Daniel M. Green, et al. 2009. “The Childhood Cancer Survivor Study: A National Cancer Institute–Supported Resource for Outcome and Intervention Research.” Journal of Clinical Oncology 27 (14): 2308–18. https://doi.org/10.1200/JCO.2009.22.3339.

Robison, Leslie L., Ann C. Mertens, John D. Boice, Norman E. Breslow, Sarah S. Donaldson, Daniel M. Green, Frederic P. Li, et al. 2002. “Study Design and Cohort Characteristics of the Childhood Cancer Survivor Study: A Multi-Institutional Collaborative Project.” Medical and Pediatric Oncology 38 (4): 229–39. https://doi.org/https://doi.org/10.1002/mpo.1316.

Rodriguez-Wallberg, Kenny A., and Kutluk Oktay. 2010. “Fertility Preservation Medicine: Options for Young Adults and Children with Cancer.” Journal of Pediatric Hematology/Oncology 32 (5): 390–96. https://doi.org/10.1097/MPH.0b013e3181dce339.

Royston, P. 2004. “Multiple Imputation of Missing Values. Stata Journal, 4 (3), 227-241.”

Rubin, Donald B. 1978. “Multiple Imputations in Sample Surveys-a Phenomenological Bayesian Approach to Nonresponse.” In, 1:20–34. American Statistical Association.

Rubin, Donald B. 2004. Multiple Imputation for Nonresponse in Surveys. Vol. 81. John Wiley & Sons.

———. 1996. “Multiple Imputation After 18+ Years.” Journal of the American Statistical Association 91 (434): 473–89. https://doi.org/10.1080/01621459.1996.10476908.

Rubin, Donald B., and Nathaniel Schenker. 1991. “Multiple Imputation in Health-Are Databases: An Overview and Some Applications.” Statistics in Medicine 10 (4): 585–98. https://doi.org/10.1002/sim.4780100410.

Schafer, Joseph L. 1997. Analysis of Incomplete Multivariate Data. CRC press.

Sklar, Charles A., Ann C. Mertens, Pauline Mitby, John Whitton, Marilyn Stovall, Catherine Kasper, Jean Mulder, et al. 2006. “Premature Menopause in Survivors of Childhood Cancer: A Report from the Childhood Cancer Survivor Study.” JNCI: Journal of the National Cancer Institute 98 (13): 890–96. https://doi.org/10.1093/jnci/djj243.

Soleimani, Reza, Elke Heytens, Zbigniew Darzynkiewicz, and Kutluk Oktay. 2011. “Mechanisms of Chemotherapy-Induced Human Ovarian Aging: Double Strand DNA Breaks and Microvascular Compromise.” Aging (Albany NY) 3 (8): 782–93. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3184979/.

Sonmezer, M. 2004. “Fertility Preservation in Female Patients.” Human Reproduction Update 10 (3): 251–66. https://doi.org/10.1093/humupd/dmh021.

Spears, N., F. Lopes, A. Stefansdottir, V. Rossi, M. De Felici, R. A. Anderson, and F. G. Klinger. 2019. “Ovarian Damage from Chemotherapy and Current Approaches to Its Protection.” Human Reproduction Update 25 (6): 673–93. https://doi.org/10.1093/humupd/dmz027.

Torrealday, Saioa, and Lubna Pal. 2015. “Premature Menopause.” Endocrinology and Metabolism Clinics of North America 44 (3): 543–57.

Varma, Sudhir, and Richard Simon. 2006. “Bias in Error Estimation When Using Cross-Validation for Model Selection.” BMC Bioinformatics 7 (1): 91. https://doi.org/10.1186/1471-2105-7-91.

Vock, David M., Julian Wolfson, Sunayan Bandyopadhyay, Gediminas Adomavicius, Paul E. Johnson, Gabriela Vazquez-Benitez, and Patrick J. O’Connor. 2016. “Adapting Machine Learning Techniques to Censored Time-to-Event Health Record Data: A General-Purpose Approach Using Inverse Probability of Censoring Weighting.” Journal of Biomedical Informatics 61 (June): 119–31. https://doi.org/10.1016/j.jbi.2016.03.009.

Von Hippel, Paul T. 2020. “How Many Imputations Do You Need? A Two-Stage Calculation Using a Quadratic Rule.” Sociological Methods & Research 49 (3): 699–718.

Whb, Wallace, and Kelnar Cjh. 2009. “Fertility in Female Childhood Cancer Survivors,” 24.

White, Ian R., and John B. Carlin. 2010. “Bias and Efficiency of Multiple Imputation Compared with Complete-Case Analysis for Missing Covariate Values.” Statistics in Medicine 29 (28): 2920–31. https://doi.org/10.1002/sim.3944.

White, Ian R, Patrick Royston, and Angela M Wood. 2011. “Multiple Imputation Using Chained Equations: Issues and Guidance for Practice.” Statistics in Medicine 30 (4): 377–99.

Wilkosz, Pawel, Gareth D. Greggains, Tom G. Tanbo, and Peter Fedorcsak. 2014. “Female Reproductive Decline Is Determined by Remaining Ovarian Reserve and Age.” PLoS ONE 9 (10). https://doi.org/10.1371/journal.pone.0108343.

Yuksel, Aytac, Gamze Bildik, Filiz Senbabaoglu, Nazli Akin, Macit Arvas, Fehmi Unal, Yagmur Kilic, et al. 2015. “The Magnitude of Gonadotoxicity of Chemotherapy Drugs on Ovarian Follicles and Granulosa Cells Varies Depending Upon the Category of the Drugs and the Type of Granulosa Cells.” Human Reproduction, October, dev256. https://doi.org/10.1093/humrep/dev256.

Zheng, Yingye, Tianxi Cai, and Ziding Feng. 2006. “Application of the Time-Dependent ROC Curves for Prognostic Accuracy with Multiple Biomarkers.” Biometrics 62 (1): 279–87. https://doi.org/10.1111/j.1541-0420.2005.00441.x.

Zou, Hui, and Trevor Hastie. 2005a. “Addendum: Regularization and Variable Selection via the Elastic Net.” Journal of the Royal Statistical Society: Series B (Statistical Methodology) 67 (5): 768–68.

———. 2005b. “Regularization and Variable Selection via the Elastic Net.” Journal of the Royal Statistical Society: Series B (Statistical Methodology) 67 (2): 301–20. https://doi.org/10.1111/j.1467-9868.2005.00503.x.